Education
2003-2007 The Hong Kong University of Science and Technology, Doctor of Philosophy
1999-2003 Third Institute of Oceanography (Xiamen, China), State Oceanic Administration, Master of Science
1995-1999 Ocean University of China (Qingdao, China), Bachelor of Science
Research Experience
2021 Department of Ocean Science, The Hong Kong University of Science and Technology, Visiting Professor
2018-2019 Department of Earth, Ocean & Atmospheric Sciences, University of British Columbia, Visiting Professor
2012-present Institute of Marine Microbes and Ecospheres, Xiamen University, Associate Director
2020-present Xiamen University, Chair Professor
2014-2020 Xiamen University, Professor
2009-2014 Xiamen University, Associate Professor
2007-2009 National University of Singapore, Postdoctoral Researcher
Areas of special interest
My research mainly focusses on marine viral ecology, including viral diversity, viral life strategy, host-virus interaction, and the ecological and biogeochemical roles of viruses in the ocean. Along with studies on viruses in the photosynthesis related systems, my team also investigated viruses in the extreme environments including deep-sea and deep biosphere. We provided experimental evidence showing the impacts of viruses on the ecological characteristics of marine bacterioplankton and evaluated the contribution of viral infection on host’s diversity, evolution and adaption, at both community and genetic levels. We have also investigated the response of marine viruses to global change such as ocean acidification and warming. Genomics and metagenomics are used in my laboratory to investigate phage and prophage genomes, in which viral evolution and host-phage gene transfer are revealed. Our studies are helpful for a better understanding of virus-mediated ecological and biogeochemical processes in the marine ecosystems. In addition, my laboratory has developed the first viral oceanographic database (gVOD) and established a collection of viral isolates (including viruses infecting autotrophic cyanobacteria and heterotrophic bacteria) and environmental viral samples collected from all over the world.
Teaching
2019-2020 Introduction of Oceanography (Undergraduate Students)
2017-present Advanced Marine Ecology (Graduate Students)
2013-present Marine Microbiology (Undergraduate Students)
2013-present Laboratory of Marine Microbiology (Undergraduate Students)
2012-present Marine Microbiology Technology (Graduate Students)
2009-2012 Laboratory of Biochemistry (Undergraduate Students)
Honors and Awards
2019 “Youth Science and Technology Innovation Leader” by Ministry of Science and Technology of China (Ten Thousand Talents Program)
2015 “National Natural Science Award (Silver Medal) by the State Council of China (The highest level scientific award in China)
2015 “Outstanding Young Scholar” by National Natural Science Foundation of China (NSFC)
2014 “Natural Science Award” (Gold Medal) by the Fujian Province, China
2009 “Erasmus Mundus Scholarship” by the European Commission
2009 “New Century Excellent Talents” by Ministry of Education of China
Funding
2021 Research center for marine carbon sequestration and biogeochemical processes. NSFC Research Center Project. Co-Investigator; CNY 60.00 M
2021 Arctic offshore ecosystems under climate change. National Key R&D Programs. PI; CNY 0.30 M
2020 Virus-driven organic carbon cycle in the deep biosphere. NSFC Key Project. PI; CNY 3.04 M
2019The fate of terrestrial organic carbon in the ocean. NSFC-UNEP Joint Project. Co-Investigator; CNY 2.63 M
2019 Primary production in the changing ocean: effects of ocean acidification on Trichodesmium metabolism and utilization of dust iron. NSFC-ISF Joint Project. Co-Investigator; CNY 1.60 M
2018 Structure and function of microbial ecosystems in Central Indian Ocean ridge. COMRA project. Co-Investigator; CNY 4.80 M
2017 Ecological significance of host-virus interaction in deep-sea and deep biosphere. Open grant of Qingdao National Laboratory for Marine Science and Technology. PI; CNY 1.00 M
2016 Marine viral ecology. NSFC Outstanding Young Scholar Project. PI; CNY 1.50 M
2016 Effects of lysogenic phage on ecophysiological characteristics of marine bacteria. NSFC General Project. PI; CNY 0.75 M
2015 Integrated study on biological carbon sequestration mechanisms in the South China Sea. NSFC Key Project. Co-Investigator; CNY 3.45 M
2014 Ecological characterization and significance of deep-sea virioplankton in the South China Sea and the western Pacific Ocean. NSFC General Project. PI; CNY 0.88 M
2014 Microbial oceanography and microbial carbon sequestration in South China Sea and western Pacific Ocean. SOA Project. Co-Investigator; CNY 12.00 M
2013 Mechanisms and processes of microbial carbon pump. MOST 973 Project. Co-Investigator; CNY 27.62 M
2012 Integrated onboard platform of marine microbial analysis. MOST 863 Project. PI; CNY 5.85 M
2011 Rapid microarray analysis of bacterioplankton in coastal and open seas. SOA Project. PI; CNY 0.85 M
2011 Microbial ecological processes and their role in carbon cycling of South China Sea. NSFC Key Project. Co-Investigator; CNY 4.00 M
2011 The mechanism of bacteriophages in ocean carbon storage. NSFC General Project. Co-Investigator; CNY 0.54 M
2011 Effects of viruses on diversity and community structure of bacterioplankton in China seas. NSFC Young Scholar Project. PI; CNY 0.23 M
Service to the community
2020-present The International Council for Exploration of the Sea (ICES) and the North Pacific Marine Science Organization (PICES) Joint Working Group on “Ocean Negative Carbon Emissions (ONCE)”, Member
2015-2018 The International Council for Exploration of the Sea (ICES) and the North Pacific Marine Science Organization (PICES) Joint Working Group on “Climate Change and Biologically-driven Ocean Carbon Sequestration (WGCCBOCS)”, Member
2014-present Arctic Council-Arctic Monitoring and Assessment Programme, Chinese Expert
2016-2019 Integrated Ocean Drilling Program Expedition 366 Mariana Convergent Margin and South Chamorro Seamount Science Party, Member
2013-2016 Integrated Ocean Drilling Program Expedition 347 Baltic Sea Basin Paleoenvironment Science Party, Member
2018-present Ecological Society of China, Professional Committee for Marine Ecology, Member
2018-present Chinese Society for Microbiology, Professional Committee for Geomicrobiology, Member
2016-present Chinese Society for Limnology and Oceanography, Professional Committee for Microbial Oceanography, Member
Editorships
2017-present Science China Earth Sciences, Editor
2020-present Journal of Marine Science and Engineering, Editorial Board Member
2017-present Frontiers in Microbiology, Review Editor
2014-present Frontiers in Marine Science, Review Editor
Selected Peer-reviewed Papers
•Zhang R, Weinbauer MG & Peduzzi P (2021) Aquatic viruses and climate change. Current Issues in Molecular Biology 41: 357-380.
• Chen X, Weinbauer MG, Jiao N &Zhang R(2021) Revisiting marine lytic and lysogenic virus-host interactions: Kill-the-Winner and Piggyback-the-Winner. Science Bulletin 66: 871-874.
• Zhou K, Xu Y,Zhang R& Qian P-Y (2021) Arms race in a cell: genomic, transcriptomic, and proteomic insights into intracellular phage–bacteria interplay in deep-sea snail holobionts. Microbiome 9: 182.
• Li H, Liu L, Wang Y, Cai L, He M, Wang L, Hu C, Jiao N &Zhang R(2021) T4‐like myovirus community shaped by dispersal and deterministic processes in the South China Sea. Environmental Microbiology 23: 1038-1052.
• Xiao X, Guo W, Li X, Wang C, Chen X, Lin X, Weinbauer MG, Zeng Q, Jiao N &Zhang R(2021) Viral lysis alters the optical properties and biological availability of dissolved organic matter derived from picocyanobacteria Prochlorococcus. Applied and Environmental Microbiology 87: e02271-20.
•Zhang R, Li Y, Yan W, Wang Y, Cai L, Luo T, Li H, Weinbauer MG & Jiao N (2020) Viral control of biomass and diversity of bacterioplankton in the deep sea. Communications Biology 3: 256.
• Cai L, Jørgensen BB, Suttle CA, He M, Cragg BA, Jiao N &Zhang R(2019) Active and diverse viruses persist in the deep sub-seafloor sediments over thousands of years. The ISME Journal 13: 1857-1864.
• Chen X, Wei W, Wang J, Li H, Sun J, Ma R, Jiao N &Zhang R(2019) Tide driven microbial dynamics through virus-host interactions in the estuarine ecosystem. Water Research 160: 118-129.
•Zhang R, Wei W & Cai L (2014) The fate and biogeochemical cycling of viral elements. Nature Reviews Microbiology 12: 850-851.
•Zhang R, Weinbauer MG & Qian P-Y (2007) Viruses and flagellates sustain apparent richness and reduce biomass accumulation of bacterioplankton in coastal marine waters. Environmental Microbiology 9: 3008-3018.
Book chapters
• Xu D, Yang Y &Zhang R(2021) Measurement of virus-induced phytoplankton mortality. Research Methods of Environmental Physiology in Aquatic Sciences, (Gao K., Hutchins D.A. & Beardall J., eds.), pp. 345-352. Springer, Singapore.
•Zhang R, Weinbauer MG & Peduzzi P (2020) Aquatic viruses and climate change. Climate Change and Microbial Ecology: Current Research and Future Trends (Second Edition), (Marxsen J, ed.) pp. 215-238. Caister Academic Press.
• Fryer P, Wheat G, Williams T, ... &Zhang R(2018) Mariana convergent margin and South Chamorro Seamount. Proceedings of the International Ocean Discovery Program, 366, International Ocean Discovery Program, College Station, TX, USA.
• Andrén T, Jørgensen BB, Cotterill C, ... &Zhang R(2015) Baltic Sea Paleoenvironment. Proceedings of the Integrated Ocean Drilling Program Volume 347, Integrated Ocean Drilling Program, College Station, TX, USA.
• Contributing author of The Ocean. In: Barros, V.R. et al. (Eds.), Climate change 2014: impacts, adaptation, and vulnerability. Part B: Regional Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, pp. 1655-1731.
Cruises
2021 Co-Chief Scientist, NSFC Open Cruise at the South China Sea (1 month)
2017 Co-Chief Scientist, NSFC Open Cruise at the South China Sea (1 month)
2016-2017 Integrated Ocean Drilling Program Expedition 366 at the Mariana, Pacific Ocean (2 months)
2016 Antarctic Research Expedition at Antarctic Peninsula (1 month)
2014 Integrated Ocean Drilling Program Expedition 347 at the Baltic Sea (2 months)
2010 NSFC Open Cruise at the Western Pacific Ocean (2 months)
2010 European Project on OCean Acidification (EPOCA) project / China Arctic Research Expedition at Ny Ålesund, Svalbard (2 months)
2009 Global Cruise of China Ocean Mineral Resources R & D Association at East Pacific and Atlantic; 3 months)
2001 The 18th China Antarctic Research Expedition at the Antarctic (5 months)
Selected Invited Talks
•Zhang R(2020) Virus-induced bacterioplankton mortality and organic carbon cycling. Gordon Research Conference (GRC) in Marine Microbes, Les Diablerets, Switzerland, May 24-29, 2020.
•Zhang R(2019) Viruses in the deep Baltic Sea biosphere. International Workshop on Aquatic Viral Ecology, Qingdao, China, January 11-12, 2019.
•Zhang R(2018) Viruses in deep sub-seafloor biosphere. Deep Volatiles, Energy & Environments Summit, Shanghai, China, March 13-14, 2018.
•Zhang R(2017) Blue carbon, green economy, high tech and sustainable development. Fifth Meeting of UK-China High Level People-to-People Dialogue UK-China Green Marine Science & Technology Innovation Forum 2017, London, UK, December 5-6, 2017.
•Zhang R(2015) Ecological and biogeochemical significance of deep virioplankton. The 2nd Xiamen Symposium on Marine Environmental Sciences, Xiamen, China, January 7-9, 2015.
•Zhang R(2014) Response of bacterioplankton community structure to acidification in the Arctic Ocean. Arctic Change 2014, Ottawa, Canada, December 8-12, 2014.
•Zhang R(2013) Response of bacterioplankton community structure to an artificial gradient of pCO2 in the Arctic Ocean. IMBIZO III: The future of marine biogeochemistry, ecosystems and societies, Goa, India, January 28-31, 2013.
Full Peer-reviewed Papers (*Corresponding author; #Co-first author)
1)Zhang, Rui; Weinbauer, Markus G; Peduzzi, Peter*; Aquatic viruses and climate change, Current Issues in Molecular Biology, 2021, 41: 357-380.
2) Zhou, Kun; Xu Ying*;Zhang, Rui*; Qian, Pei-Yuan*; Arms race in a cell: genomic, transcriptomic, and proteomic insights into intracellular phage–bacteria interplay in deep-sea snail holobionts, Microbiome, 2021, 9: 182.
3) Chen, Xiaowei; Weinbauer, Markus G.; Jiao, Nianzhi*;Zhang, Rui*; Revisiting marine lytic and lysogenic virus-host interactions: Kill-the-Winner and Piggyback-the-Winner, Science Bulletin, 2021, 66: 871-874.
4) Li, Huifang; Liu, Lu; Wang, Yu; Cai, Lanlan; He, Maoqiu; Wang, Long; Hu, Chen; Jiao, Nianzhi;Zhang, Rui*; T4‐like myovirus community shaped by dispersal and deterministic processes in the South China Sea, Environmental Microbiology, 2021, 23: 1038-1052.
5) Huang, Xingyu; Jiao, Nianzhi*;Zhang, Rui*; The genomic content and context of auxiliary metabolic genes in roseophages, Environmental Microbiology, 2021, 23: 3743-3757.
6) Xiao, Xilin; Guo, Weidong; Li, Xiaolin; Wang, Chao; Chen, Xiaowei; Lin, Xingqin; Weinbauer, Markus G.; Zeng, Qinglu; Jiao, Nianzhi*;Zhang, Rui*; Viral lysis alters the optical properties and biological availability of dissolved organic matter derived from Prochlorococcus picocyanobacteria, Applied and Environmental Microbiology, 2021, 87: e02271-20.
7) Ma, Ruijie; Lai, Jiayong; Chen, Xiaowei; Wang, Long; Yang, Yahui; Wei, Shuzhen; Jiao, Nianzhi;Zhang, Rui*; A novel phage infecting Alteromonas represents a distinct group of siphophages infecting diverse aquatic copiotrophs, mSphere, 2021, 6: e00454-21.
8) Zhou, Kun; Qian, Pei‐Yuan; Zhang, Ting; Xu, Ying*;Zhang, Rui*; Unique phage–bacterium interplay in sponge holobionts from the southern Okinawa Trough hydrothermal vent, Environmental Microbiology Reports, 2021, in press.
9) Zang, Lin; Liu, Yongqin*; Song, Xuanying; Cai, Lanlan; Liu, Keshao; Luo, Tingwei;Zhang, Rui*; Unique T4-like phages in high-altitude lakes above 4500 m on the Tibetan Plateau, Science of Total Environment, 2021, 801: 149649.
10) He, Maoqiu; Cai, Lanlan; Xu, Jie; Li, Xiangfu; Shi, Zhen; Jiao, Nianzhi;Zhang, Rui*; Sedimentation of psbA gene-containing cyanophages, cyanobacteria, and eukaryotes in marine and estuarine sediments, Journal of Geophysical Research: Biogeosciences, 2021, 126: e2020JG006156.
11) Feng, Xuejin; Yan, Wei; Wang, Anan; Ma, Ruijie; Chen, Xiaowei; Lin, Ta-Hui; Chen, Yi-Lung; Wei, Shuzhen; Jin, Tao; Jiao, Nianzhi*;Zhang, Rui*; A novel broad host range phage infecting Alteromonas, Viruses, 2021, 13: 987.
12) Xie, Le; Wei, Wei; Cai, Lanlan; Chen, Xiaowei; Huang, Yuhong; Jiao, Nianzhi;Zhang, Rui*; Luo, Ya-Wei*; A global viral oceanography database (gVOD), Earth System Science Data, 2021, 13: 1251–1271.
13) Yan, Wei*; Feng, Xuejin; Zhang, Wei; Nawaz, Muhammad Zohaib; Luo, Tingwei;Zhang, Rui*; Jiao, Nianzhi*; Genomes of diverse isolates of Prochlorococcus high-light-adapted clade II in the western Pacific Ocean, Frontiers in Marine Science, 2021, 7: 619826.
14) Zhang, Zefeng#; Qin, Fang#; Chen, Feng; Chu, Xiao; Luo, Haiwei;Zhang, Rui; Du, Sen; Tian, Zhen; Zhao, Yanlin*; Culturing novel and abundant pelagiphages in the ocean, Environmental Microbiology, 2021, 23: 1145-1161.
15) Zhang, Lianbao; Chen, Mingming; Chen, Xiaowei; Wang, Jianning; Zhang, Yu; Xiao, Xilin; Hu, Chen; Liu, Jihua;Zhang, Rui; Xu, Dapeng; Jiao, Nianzhi; Zhang Yao*; Nitrifiers drive successions of particulate organic matter and microbial community composition in a starved macrocosm, Environment International, 2021, 157: 106776.
16) Pei, Shengxiang; Xie, Fuquan;Zhang, Rui; Zhang, Gaiyun*; Complete genome sequence of Janibaecter indicus YB324 from an Atlantic marine sediment, Marine Genomics, 2021, 58: 100833.
17) Jiao, Nianzhi*; Liu, Jihua; Edwards, Bethanie; Lv, Zongqing; Cai, Ruanhong; Liu, Yongqin; Xiao, Xilin; Wang, Jianning; Jiao, Fanglue; Wang, Rui; Huang, Xingyu; Guo, Bixi; Sun, Jia;Zhang, Rui; Zhang, Yao; Tang, Kai; Zheng, Qiang; Azam, Farooq; Batt, John; Cai, Wei-Jun; He, Chen; Herndl, Gerhard J.; Hill, Paul; Hutchins, David; Laroche, Julie; Lewis, Marlon; Macintyre, Hugh; Polimene, Luca; Robinson, Carol; Shi, Quan; Suttle, Curtis A.; Thomas, Helmuth; Wallace, Douglas; Legendre, Louis*; Correcting a major error in assessing organic carbon pollution in natural waters, Science Advances, 2021, 7: eabc7318.
18) Huang, Ruiping; Sun, Jiazhen; Yang, Yunlan; Jiang, Xiaowen; Wang, Zhen; Song, Xue; Wang, Tifeng; Zhang, Di; Li, He; Yi, Xiangqi; Chen, Shouchang; Bao, Nanou; Qu, Liming;Zhang, Rui; Jiao, Nianzhi; Gao, Yahui; Huang, Bangqin; Lin, Xin; Gao, Guang; Gao, Kunshan*; Elevated pCO2 impedes succession of phytoplankton community from diatoms to dinoflagellates along with increased abundance of viruses and bacteria, Frontiers in Marine Science, 2021, 8: 642208.
19) Fucich, Daniel#; Xu, Yongle#; Sosa, Ana;Zhang, Rui; Jiao, Nianzhi; Chen, Feng*; Complete genome sequence of Chesapeake Bay winter Synechococcus sp. strain CBW1107, a member of subalpine cluster II, Microbiology Resource Announcements, 2021, 10: e01399-20.
20) Fucich, Daniel#; Xu, Yongle#; Sosa, Ana; Jia, Yufeng;Zhang, Rui; Jiao, Nianzhi; Chen, Feng*; Complete genome sequences of Chesapeake Bay Synechococcus strains CBW1002 and CBW1006 isolated in winter, Genome Biology and Evolution, 2021, 13: evab009.
21) Ding, Wei#; Wang, Ruojun#; Liang, Zhicong;Zhang, Rui; Qian, Pei-Yuan*; Zhang, Weipeng*; Expanding our understanding of marine viral diversity through metagenomic analyses of biofilms, Marine Life Science and Technology, 2021: 1-10.
22) 严威*; 冯雪金; 张伟;张锐; 焦念志; 原绿球藻生态型和亚生态型分化与环境适应性研究进展, 中国科学: 地球科学, 2021, 51: 35-45.
23) 焦念志*;张锐*; 陈宜瑜*; 病毒防疫的生态屏障, 中国科学: 地球科学, 2021, 51: 167-170.
24)Zhang, Rui*; Li, Yanxia; Yan, Wei; Wang, Yu; Cai, Lanlan; Luo, Tingwei; Li, Huifang; Weinbauer, Markus G; Jiao, Nianzhi; Viral control of biomass and diversity of bacterioplankton in the deep sea, Communications Biology, 2020, 3(1): 256.
25) Tian, Yuan#; Cai, Lanlan#; Xu, Yongle; Luo, Tingwei; Zhao, Zhao; Wang, Qiong; Liu, Lu; Xiao, Xiang; Wang, Fengping; Jiao, Nianzhi;Zhang, Rui*; Stability and infectivity of allochthonous viruses in deep sea: A long-term high pressure simulation experiment, Deep-Sea Research Part I-Oceanographic Research Papers, 2020, 161: 103302.
26) Jin, Min#; Cai, Lanlan#; Ma, Ruijie; Zeng, Runying; Jiao, Nianzhi*;Zhang, Rui*; Prevalence of temperate viruses in deep South China Sea and western Pacific Ocean, Deep-Sea Research Part I-Oceanographic Research Papers, 2020, 166: 103403.
27) Guo, Jiaying; Sun, Jia; Xu, Yongle; Fang, Lüping; Jiao, Nianzhi;Zhang, Rui*; Arenibacter aquaticus sp. nov., a marine bacterium isolated from surface sea water in the South China Sea, International Journal of Systematic and Evolutionary Microbiology, 2020, 70: 958-963.
28) Fryer, Patricia; Wheat, C Geoffrey; Williams, Trevor; Kelley, Christopher; Johnson, Kevin; Ryan, Jeffrey; Kurz, Walter; Shervais, John; Albers, Elmar; Bekins, Barbara; Debret, Baptiste; Deng, Jianghong; Dong, Yanhui; Eickenbusch, Philip; Frery, Emanuelle; Ichiyama, Yuji; Johnston, Raymond; Kevorkian, Richard; Magalhaes, Vitor; Mantovanelli, Simone; Menapace, Walter; Menzies, Catriona; Michibayashi, Katsuyoshi; Moyer, Craig; Mullane, Kelli; Park, Jung-Woo; Price, Roy; Sissmann, Olivier; Suzuki, Shino; Takai, Ken; Walter, Bastien;Zhang, Rui; Amon, Diva; Glickson, Deborah; Pomponi, Shirley*; Mariana serpentinite mud volcanism exhumes subducted seamount materials: implications for the origin of life, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 2020, 378: 20180425.
29) Pei, Shengxiang; Xie, Fuquan; Niu, Siwen; Ma, Lingqi;Zhang, Rui; Zhang, Gaiyun*; Brevibacterium profundi sp. nov., isolated from deep-sea sediment of the Western Pacific Ocean, International Journal of Systematic and Evolutionary Microbiology, 2020, 70: 5818-5823.
30) Yan, Wei*; Feng, Xuejin; Zhang, Wei;Zhang, Rui; Jiao, Nianzhi; Research advances on ecotype and sub-ecotype differentiation of Prochlorococcus and its environmental adaptability, Science China Earth Sciences, 2020, 63: 1691-1700.
31) Sun, Jia*; Guo, Jiaying; Lin, Ta-Hui; Feng, Xuejin;Zhang, Rui; Pseudopontixanthobacter vadosimaris gen. nov., sp. nov., isolated from shallow sea near Kueishan Island, International Journal of Systematic and Evolutionary Microbiology, 2020, 70: 6444-6449.
32) 肖喜林#; 咸淑慧#;张锐; 焦念志*; 海洋异养细菌利用溶解有机碳的定量评估, 微生物学报, 2020, 60: 1090-1105.
33) Cai, Lanlan; Jørgensen, Bo B; Suttle, Curtis A; He, Maoqiu; Cragg, Barry A; Jiao, Nianzhi*;Zhang, Rui*; Active and diverse viruses persist in the deep sub-seafloor sediments over thousands of years, The ISME Journal, 2019, 13: 1857-1864.
34) Chen, Xiaowei; Wei, Wei; Wang, Jianning; Li, Hongbo; Sun, Jia; Ma, Ruijie; Jiao, Nianzhi*;Zhang, Rui*; Tide driven microbial dynamics through virus-host interactions in the estuarine ecosystem, Water Research, 2019, 160: 118-129.
35) Xia, Xiaomin; Wang, Yu; Yang, Yunlan; Luo, Tingwei; Van Nostrand, Joy D; Zhou, Jizhong; Jiao, Nianzhi*;Zhang, Rui*; Ocean acidification regulates the activity, community structure and functional potential of heterotrophic bacterioplankton in an oligotrophic gyre, Journal of Geophysical Research: Biogeosciences, 2019, 124: 1001-1017.
36) Zhao, Yanlin#*; Qin, Fang#;Zhang, Rui; Giovannoni, Stephen J; Zhang, Zefeng; Sun, Jing; Du, Sen; Rensing, Christopher; Pelagiphages in the Podoviridae family integrate into host genomes, Environmental Microbiology, 2019, 21: 1989-2001.
37) Wang, Yu#; Liu, Yanting#; Wang, Jianning; Luo, Tingwei;Zhang, Rui; Sun, Jia; Zheng, Qiang*; Jiao, Nianzhi*; Seasonal dynamics of bacterial communities in the surface seawater around subtropical Xiamen Island, China, as determined by 16S rRNA gene profiling, Marine Pollution Bulletin, 2019, 142: 135-144.
38) Wei, Wei; Wang, Nannan; Cai, Lanlan; Zhang, Chuanlun; Jiao, Nianzhi*;Zhang, Rui*; Impacts of freshwater and seawater mixing on the production and decay of virioplankton in a subtropical estuary, Microbial Ecology, 2019, 78: 843-854.
39) Jin, Min; Guo, Xun;Zhang, Rui; Qu, Wu; Gao, Boliang; Zeng, Runying*; Diversities and potential biogeochemical impacts of mangrove soil viruses, Microbiome, 2019, 7: 58.
40) Zhao, Zhao#; Gonsior, Michael#; Schmitt-Kopplin, Philippe; Zhan, Yuanchao;Zhang, Rui; Jiao, Nianzhi*; Chen, Feng*; Microbial transformation of virus-induced dissolved organic matter from picocyanobacteria: coupling of bacterial diversity and DOM chemodiversity, The ISME Journal, 2019, 13: 2551-2565.
41) Chen, Xiaowei; Ma, Ruijie; Yang, Yunlan; Jiao, Nianzhi*;Zhang, Rui*; Viral regulation on bacterial community impacted by lysis-lysogeny switch: A microcosm experiment in eutrophic coastal waters, Frontiers in Microbiology, 2019, 10: 1763.
42) Cai, Lanlan; Ma, Ruijie; Chen, Hong; Yang, Yunlan; Jiao, Nianzhi;Zhang, Rui*; A newly isolated roseophage represents a distinct member of Siphoviridae family, Virology Journal, 2019, 16: 128.
43) Zhou, Kun#;Zhang, Rui#; Sun, Jin; Zhang, Weipeng; Tian, Ren-Mao; Chen, Chong; Kawagucci, Shinsuke; Xu, Ying*; Potential interactions between Clade SUP05 sulfur-oxidizing bacteria and phages in hydrothermal vent sponges, Applied and Environmental Microbiology, 2019, 85: e00992-19.
44) 王东晓*; 王强*; 蔡树群; 尚晓东; 彭世球; 舒业强; 肖劲根; 谢晓辉; 张志伟; 刘志强; 兰健; 陈大可; 薛惠洁; 王桂华; 甘剑平; 解习农;张锐; 陈慧; 杨庆轩; 南海中深层动力格局与演变机制研究进展, 中国科学: 地球科学, 2019, 49: (12), 1919-1932.
45) Wang, Dongxiao*; Wang, Qiang*; Cai, Shuqun; Shang, Xiaodong; Peng, Shiqiu; Shu, Yeqiang; Xiao, Jingen; Xie, Xiaohui; Zhang, Zhiwei; Liu, Zhiqiang; Lan, Jian; Chen, Dake; Xue, Huijie; Wang, Guihua; Gan, Jianping; Xie, Xinong;Zhang, Rui; Chen, Hui; Yang, Qingxuan; Advances in research of the mid-deep South China Sea circulation, Science China Earth Sciences, 2019, 62: 1992-2004.
46) Yan, Wei;Zhang, Rui*; Wei, Shuzhen; Zeng, Qinglu; Xiao, Xilin; Wang, Qiong; Yan, Hanrui; Jiao, Nianzhi*; Draft genome sequence of Prochlorococcus marinus strain XMU1401, isolated from the western tropical North Pacific Ocean, Genome Announcements, 2018, 6: e01431-17.
47) Wei, Wei;Zhang, Rui*; Peng, Lulu; Liang, Yantao; Jiao, Nianzhi*; Effects of temperature and photosynthetically active radiation on virioplankton decay in the western Pacific Ocean, Scientific Reports, 2018, 8: 1525.
48) Lai, Jennifer Y H; Zhang, Hao; Chiang, Miranda Hei Yin; Lun, Clare Hau In;Zhang, Rui; Lau, Stanley C K*; The putative functions of lysogeny in mediating the survivorship of Escherichia coli in seawater and marine sediment, FEMS Microbiology Ecology, 2018, 94: (2), fix187.
49) 卢龙飞;张锐; 徐杰; 焦念志*; 病毒对海洋细菌代谢的影响及其生物地球化学效应, 地球科学进展, 2018, (3), 225-235.
50) Yan, Wei; Wei, Shuzhen; Wang, Qiong; Xiao, Xilin; Zeng, Qinglu; Jiao, Nianzhi*;Zhang, Rui*; Genome rearrangement shapes Prochlorococcus ecological adaptation, Applied and Environmental Microbiology, 2018, 84: e01178-18.
51) Yan, Wei;Zhang, Rui*; Jiao, Nianzhi*; A long-standing complex tropical dipole shapes marine microbial biogeography, Applied and Environmental Microbiology, 2018, 84: e00614-18.
52) Robinson, Carol*; Wallace, Douglas; Hyun, Jung-Ho; Polimene, Luca; Benner, Ronald; Zhang, Yao; Cai, Ruanhong;Zhang, Rui; Jiao, Nianzhi; An implementation strategy to quantify the marine microbial carbon pump and its sensitivity to global change, National Science Review, 2018, 5: 474-480.
53) Xu, Yongle#;Zhang, Rui#; Wang, Nannan; Cai, Lanlan; Tong, Yigang; Sun, Qiang; Chen, Feng*; Jiao, Nianzhi*; Novel phage-host interactions and evolution as revealed by a cyanomyovirus isolated from an estuarine environment, Environmental Microbiology, 2018, 20: 2974-2989.
54) Wang, Nannan; Luo, Ya-Wei; Polimene, Luca;Zhang, Rui; Zheng, Qiang; Cai, Ruanhong; Jiao, Nianzhi*; Contribution of structural recalcitrance to the formation of the deep oceanic dissolved organic carbon reservoir, Environmental Microbiology Reports, 2018, 10: 711-717.
55) Xiao, Xilin; Zeng, Qinglu;Zhang, Rui*; Jiao, Nianzhi*; Prochlorococcus viruses—From biodiversity to biogeochemical cycles, Science China Earth Sciences, 2018, 12: 1728-1736.
56) Jiao, Nianzhi*; Liang, Yantao; Zhang, Yongyu; Liu, Jihua; Zhang, Yao;Zhang, Rui; Zhao, Meixun; Dai, Minhan; Zhai, Weidong; Gao, Kunshan; Song, Jinming; Yuan, Dongliang; Li, Chao; Lin, Guanghui; Huang, Xiaoping; Yan, Hongqiang; Hu, Limin; Zhang, Zenghu; Wang, Long; Cao, Chunjie; Luo, Ya-Wei; Luo, Tingwei; Wang, Nannan; Dang, Hongyue; Wang, Dongxiao; Zhang, Si; Carbon pools and fluxes in the China Seas and adjacent oceans, Science China Earth Sciences, 2018, 61: 1535-1563.
57) 焦念志*; 梁彦韬; 张永雨; 刘纪化; 张瑶;张锐; 赵美训; 戴民汉; 翟惟东; 高坤山; 宋金明; 袁东亮; 李超; 林光辉; 黄小平; 严宏强; 胡利民; 张增虎; 王龙; 曹纯洁; 罗亚威; 骆庭伟; 王南南; 党宏月; 王东晓; 张偲; 中国海及邻近区域碳库与通量综合分析, 中国科学: 地球科学, 2018, 48: 1393-1421.
58) Yang, Yunlan; Cai, Lanlan; Wang, Yu; Jiao, Nianzhi*;Zhang, Rui*; Microarray analysis of gene expression of Dinoroseobacter shibae DFL12T in response to phage R2C infection, Marine Genomics, 2018, 42: 53-57.
59) 肖喜林; 曾庆璐;张锐*; 焦念志*; 原绿球藻病毒研究进展——从多样性到生物地球化学过程, 中国科学: 地球科学, 2018, 48: 1589-1599.
60) 陈虹; 蔡兰兰; 焦念志*;张锐*; 深部生物圈病毒研究进展与展望, 科学通报, 2018, 63: 3911-3919.
61) Yang, Yunlan#; Cai, Lanlan#; Ma, Ruijie; Xu, Yongle; Tong, Yigang; Huang, Yong; Jiao, Nianzhi*;Zhang, Rui*; A novel roseosiphophage isolated from the oligotrophic South China Sea, Viruses, 2017, 9: 109.
62) He, Maoqiu#; Cai, Lanlan#; Zhang, Chuanlun; Jiao, Nianzhi*;Zhang, Rui*; Phylogenetic diversity of T4-type phages in sediments from the subtropical Pearl River Estuary, Frontiers in Microbiology, 2017, 8: 897.
63)Zhang, Rui*; Jiang, Tao; Tian, Yuan; Xie, Shucheng; Zhou, Lian; Li, Qian; Jiao, Nianzhi*; Volcanic ash stimulates growth of marine autotrophic and heterotrophic microorganisms, Geology, 2017, 45: 479-682.
64) Lu, Longfei; Cai, Lanlan; Jiao, Nianzhi;Zhang, Rui*; Isolation and characterization of the first phage infecting ecologically important marine bacteria Erythrobacter, Virology Journal, 2017, 14: 104.
65) Wang, Yu#;Zhang, Rui#; He, Zhili; Van Nostrand, Joy D; Zheng, Qiang; Zhou, Jizhong*; Jiao, Nianzhi*; Functional gene diversity and metabolic potential of the microbial community in an estuary-shelf environment, Frontiers in Microbiology, 2017, 8: 1153.
66) Liu, Lu; Cai, Lanlan;Zhang, Rui*; Co-existence of freshwater and marine T4-like myoviruses in a typical subtropical estuary, FEMS Microbiology Ecology, 2017, 93: fix119.
67) Wang, Jianjun; Zhang, Meigen; Bai, Xiaolin; Tan, Hongjian; Li, Sabrina; Liu, Jiping;Zhang, Rui; Wolters, Mark A; Qin, Xiuyuan; Zhang, Miming; Lin, Hongmei; Li, Yuenan; Li, Jonathan*; Chen, Liqi*; Large-scale transport of PM2.5 in the lower troposphere during winter cold surges in China, Scientific Reports, 2017, 7: 13238.
68) Wang, Yu#;Zhang, Rui#; Zheng, Qiang; Deng, Ye; Van Nostrand, Joy D; Zhou, Jizhong*; Jiao, Nianzhi*; Bacterioplankton community resilience to ocean acidification: evidence from microbial network analysis, ICES Journal of Marine Science, 2016, 73: 865-875.
69) Liu, Yong-Qiang*; Zhang, Xing;Zhang, Rui; Liu, Wen-Tso; Tay, Joo-Hwa; Effects of hydraulic retention time on aerobic granulation and granule growth kinetics at steady state with a fast start-up strategy, Applied Microbiology and Biotechnology, 2016, 100: 469-477.
70) Zhao, Zhao; Sun, Jia;Zhang, Rui*; Jiao, Nianzhi*; Binariimonas pacifica gen. nov., sp. nov., a novel marine bacterium of Family Sphingomonadaceae isolated from East Pacific Ocean surface seawater, Current Microbiology, 2016, 72: 276-281.
71) Cai, Lanlan;Zhang, Rui*; He, Ying; Feng, Xiaoyuan; Jiao, Nianzhi*; Metagenomic analysis of virioplankton of the subtropical Jiulong River Estuary, China, Viruses, 2016, 8: (2), 35.
72) Zhang, Fei; Lin, Wenxin;Zhang, Rui; Zheng, Qiang; Jiao, Nianzhi*; Genome sequence of Salegentibacter mishustinae KCTC 12263, containing a complete subtype I-B CRISPR-Cas system, Genome Announcements, 2016, 4: 00267-16.
73) Liu, Haijiao; Xue, Bing; Feng, Yuanyuan;Zhang, Rui; Chen, Mianrun; Sun, Jun*; Size-fractionated Chlorophyll a biomass in the northern South China Sea in summer 2014, Chinese Journal of Oceanology and Limnology, 2016, 34: 672-682.
74) Oh, Seungdae;Zhang, Rui; Wu, Qinglong L; Liu, Wen-Tso*; Evolution and adaptation of SAR11 and Cyanobium in a saline Tibetan lake, Environmental Microbiology Reports, 2016, 8: 595-604.
75) Zheng, Qiang*; Liu, Yanting; Jeanthon, Christian;Zhang, Rui; Lin, Wenxin; Yao, Jicheng; Jiao, Nianzhi*; Geographic impact on genomic divergence as revealed by comparison of nine Citromicrobial genomes, Applied and Environmental Microbiology, 2016, 82: 7205-7216.
76) 李灼; 孙军*; 刘海娇; 薛冰; 张翠霞;张锐; 夏季南海北部微型浮游动物群落, 海洋学报, 2016, 38: 31-42.
77) Ji, Jianda;Zhang, Rui*; Jiao, Nianzhi*; Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12, Standards in Genomic Sciences, 2015, 10: 6.
78) Xu, Yongle;Zhang, Rui*; Li, Qipei; Liu, Keshao; Jiao, Nianzhi*; Marivirga lumbricoides sp. nov., a marine bacterium isolated from the South China Sea, International Journal of Systematic and Evolutionary Microbiology, 2015, 65: 452-456.
79) Cai, Lanlan; Yang, Yunlan; Jiao, Nianzhi*;Zhang, Rui*; Complete genome sequence of vB_DshP-R2C, a N4-like lytic roseophage, Marine Genomics, 2015, 22: 15-17.
80) Xia, Xiaomin; Wang, Jianjun; Ji, Jiabin; Zhang, Jiexia; Chen, Liqi*;Zhang, Rui; Bacterial communities in marine aerosols revealed by 454 pyrosequencing of the 16S rRNA gene, Journal of the Atmospheric Sciences, 2015, 72: 2997-3008.
81) Cai, Lanlan; Yang, Yunlan; Jiao, Nianzhi*;Zhang, Rui*; Evaluation of tangential flow filtration for the concentration and separation of bacteria and viruses in contrasting marine environments, PLoS ONE, 2015, 10: e0136741.
82) 杨芸兰; 蔡兰兰;张锐*; 气候变化对海洋病毒生态特性及其生物地球化学效应的影响, 微生物学报, 2015, 55: 1097-1104.
83) Jiao, Nianzhi*; Chen, Dake; Luo, Yongming; Huang, Xiaoping;Zhang, Rui; Zhang, Haibo; Jiang, Zhijian; Zhang, Fei; Climate change and anthropogenic impacts on marine ecosystems and countermeasures in China, Advances in Climate Change Research, 2015, 6: 118-125.
84) Xu, Yongle;Zhang, Rui*; Jiao, Nianzhi*; Complete genome sequence of Paracoccus marcusii phage vB_PmaS-R3 isolated from the South China Sea, Standards in Genomic Sciences, 2015, 10: 94.
85) Jiao, Nianzhi*; Legendre, Louis*; Robinson, Carol*; Thomas, Helmuth*; Luo, Ya-Wei; Dang, Hongyue; Liu, Jihua;Zhang, Rui; Tang, Kai; Luo, Tingwei; Li, Chao; Wang, Xiaoxue; Zhang, Chuanlun; Comment on “Dilution limits dissolved organic carbon utilization in the deep ocean”, Science, 2015, 350: 1483-1483.
86) 蔡兰兰; 殷思博; 杨芸兰;张锐*; 厦门海域春季浮游病毒的丰度及形态多样性分析, 厦门大学学报：自然科学版, 2015, 54: 829-836.
87) Zheng, Qiang; Jiao*, Nianzhi;Zhang, Rui; Wei, Jingjing; Zhang, Fei; The evolutionary divergence of psbA gene in Synechococcus and their myoviruses in the East China Sea, PLoS ONE, 2014, 9: e86644.
88) Xian, Shuhui;Zhang, Rui*; Sun, Jia; Chen, Yi; Deng, Wenchao; Li, Shuhui; Jiao, Nianzhi*; Seohaeicola westpacificensis sp. nov., a novel member of genera Seohaeicola isolated from deep west Pacific sea water, Current Microbiology, 2014, 69: 32-36.
89) Jiao, Nianzhi*; Luo, Tingwei;Zhang, Rui; Yan, Wei; Lin, Yajuan; Johnson, Zackary I; Tian, Jiwei; Yuan, Dongliang; Yang, Qingxuan; Zheng, Qiang; Sun, Jia; Hu, Dunxin; Wang, Pinxian; Presence of Prochlorococcus in the aphotic waters of the western Pacific Ocean, Biogeosciences, 2014, 11: 2391-2400.
90) Li, Yanxia#; Luo, Tingwei#; Sun, Jia; Cai, Lanlan; Jiao, Nianzhi*;Zhang, Rui*; Lytic viral infection of bacterioplankton in deep waters of the western Pacific Ocean, Biogeosciences, 2014, 11: 2531-2542.
91) Lai, Jennifer Y H#; Zhang, Hao#; Chiang, Miranda H Y; Yu, Min;Zhang, Rui*; Lau, Stanley C K*; Draft genome sequence of Escherichia coli E1728 isolated from marine sediment in Hong Kong, Genome Announcements, 2014, 2: e00430-14.
92) 夏晓敏; 汪建君; 陈立奇; 颜金培;张锐*; 南极长城站空气微生物的分子生态学分析, 极地研究, 2014, 26: 186-192.
93) Wang, Yu;Zhang, Rui; Zheng, Qiang*; Jiao, Nianzhi*; Draft genome sequences of two marine phototrophic bacteria, Erythrobacter longus strain DSM 6997 and Erythrobacter litoralis strain DSM 8509, Genome Announcements, 2014, 2: e00677-14.
94) Lai, Jennifer Y H#; Zhang, Hao#; Chiang, Miranda H Y; Yu, Min;Zhang, Rui*; Lau, Stanley C K*; Draft genome sequences of three Escherichia coli strains investigated for the effects of lysogeny on niche diversification, Genome Announcements, 2014, 2: e00955-14.
95) Jiao, Nianzh*; Robinson, Carol*; Azam, Farooq*; Thomas, Helmuth*; Baltar, F; Dang, Hongyue; Hardman-Mountford, NJ; Johnson, M; Kirchman, DL; Koch, BP; Legendre, Louis; Li, Chao; Liu, Jihua; Luo, Tingwei; Luo, Ya-Wei; Mitra, A; Romanou, A; Tang, Kai; Wang, Xiaoxue; Zhang, Chuanlun;Zhang, Rui; Mechanisms of microbial carbon sequestration in the ocean–future research directions, Biogeosciences, 2014, 11: 5285-5306.
96) Wang, Jianjun#; Chen, Liqi#*; Li, Li; He, Jianhua; Chen, Jian; Jiang, Chuanjie; Wang, Weiguo; Li, Sabrina; Li, Yiliang;Zhang, Rui*; Preliminary identification of palaeofloods with the alkane ratio C31/C17 and their potential link to global climate changes, Scientific Reports, 2014, 4: 6502.
97) Liang, Yantao#; Li, Li#; Luo, Tingwei; Zhang, Yao;Zhang, Rui*; Jiao, Nianzhi*; Horizontal and vertical distribution of marine virioplankton: A basin scale investigation based on a global cruise, PLoS ONE, 2014, 9: e111634.
98) Oh, Seungdae;Zhang, Rui; Wu, Qinglong L; Liu, Wen-Tso*; Draft genome sequence of a novel SAR11 clade species abundant in a Tibetan lake, Genome Announcements, 2014, 2: e01137-14.
99)Zhang, Rui*; Wei, Wei; Cai, Lanlan; The fate and biogeochemical cycling of viral elements, Nature Reviews Microbiology, 2014, 12: 850-851.
100) Zheng, Qiang#;Zhang, Rui#; Xu, Yongle; White III, Richard Allen; Wang, Yu; Luo, Tingwei; Jiao, Nianzhi*; A marine inducible prophage vB_CibM-P1 isolated from the aerobic anoxygenic phototrophic bacterium Citromicrobium bathyomarinum JL354, Scientific Reports, 2014, 4: 7118.
101) Lau, Stanley C K;Zhang, Rui; Brodie, Eoin L; Piceno, Yvette M; Andersen, Gary; Liu, Wen-Tso*; Biogeography of bacterioplankton in the tropical seawaters of Singapore, FEMS Microbiology Ecology, 2013, 84: 259-269.
102) Li, Qipei; Xu, Yongle; Liu, Keshao; Cai, Lanlan; Fu, Yingnan; Sun, Jia;Zhang, Rui*; Pelagibacterium nitratireducens sp. nov., a marine alphaproteobacterium isolated from the East China Sea, Current Microbiology, 2013, 66: 450-455.
103) Wei, Jingjing*; Mao, Yujiao; Zheng, Qiang;Zhang, Rui; Wang, Ya-Nan; Erythrobacter westpacificensis sp. nov., a marine bacterium isolated from the Western Pacific, Current Microbiology, 2013, 66: 385-390.
104)Zhang, Rui#*; Xia, Xiaomin#; Lau, Stanley C K; Motegi, Chiaki; Weinbauer, Markus G; Jiao, Nianzhi*; Response of bacterioplankton community structure to an artificial gradient of pCO2 in the Arctic Ocean, Biogeosciences, 2013, 10: 3679-3689.
105) 焦念志*; 汤凯; 张瑶;张锐; 徐大鹏; 郑强; 海洋微型生物储碳过程与机制概论, 微生物学通报, 2013, 40: 71-86.
106) 焦念志*; 张传伦; 李超; 王晓雪; 党宏月; 曾庆璐;张锐; 张瑶; 汤凯; 张子莲; 徐大鹏; 海洋微型生物碳泵储碳机制及气候效应, 中国科学: 地球科学, 2013, 43: 1-18.
107)Zhang, Rui*; Weinbauer, Markus G; Tam, Yin Ki; Qian, Pei-Yuan; Response of bacterioplankton to a glucose gradient in the absence of lysis and grazing, FEMS Microbiology Ecology, 2013, 85: 443-451.
108) Li, Yanxia; Chan, Yuki; Fu, Yingnan;Zhang, Rui*; Chiu, Jill MY*; Coralslurrinella hongkonensis gen. nov., sp. nov., a novel bacterium in the family Psychromonadaceae, isolated from the coral Platygyra carnosus, Antonie van Leeuwenhoek, 2013, 104: 983-991.
109)Zhang, Rui; Wu, Qinglong; Piceno, Yvette M; Desantis, Todd Z; Saunders, F Michael; Andersen, Gary L; Liu, Wen-Tso*; Diversity of bacterioplankton in contrasting Tibetan lakes revealed by high-density microarray and clone library analysis, FEMS Microbiology Ecology, 2013, 86: 277-287.
110) Zheng, Qiang; Jiao, Nianzhi*;Zhang, Rui; Chen, Feng; Suttle, Curtis A; Prevalence of psbA-containing cyanobacterial podoviruses in the ocean, Scientific Reports, 2013, 3: 3207.
111) Chiu, Jill MY*; Li, Sam; Li, Amy; Po, Beverly;Zhang, Rui; Shin, Paul KS; Qiu, Jian-Wen; Bacteria associated with skeletal tissue growth anomalies in the coral Platygyra carnosus, FEMS Microbiology Ecology, 2012, 79: 380-391.
112) Tamaki, Hideyuki;Zhang, Rui; Angly, Florent E; Nakamura, Shota; Hong, Pei-Ying; Yasunaga, Teruo; Kamagata, Yoichi; Liu, Wen-Tso*; Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical climate, Environmental Microbiology, 2012, 14: 441-452.
113) Zheng, Qiang;Zhang, Rui; Fogg, Paul CM; Beatty, J Thomas; Wang, Yu; Jiao, Nianzhi*; Gain and loss of phototrophic genes revealed by comparison of two Citromicrobium bacterial genomes, PLoS ONE, 2012, 7: e35790.
114) 黄诗婷; 陈荣元; 刘克韶; 夏晓敏;张锐; 刘海鹏*; 四个拟穴青蟹养殖池水环境中细菌群落结构的比较研究, 台湾海峡, 2012, 31: 387-395.
115) Fabrega, Julia;Zhang, Rui; Renshaw, Joanna C; Liu, Wen-Tso; Lead, Jamie R*; Impact of silver nanoparticles on natural marine biofilm bacteria, Chemosphere, 2011, 85: 961-966.
116) Hu, Anyi; Jiao, Nianzhi*;Zhang, Rui; Yang, Zao; Niche-partitioning of marine Group I Crenarchaeota in the euphotic and upper mesopelagic zones of the East China Sea, Applied and Environmental Microbiology, 2011, 77: 7469-7478.
117) Zheng, Qiang; Wang, Yanan; Chen, Chuang; Wang, Yu; Xia, Xiaomin; Fu, Yingnan;Zhang, Rui; Jiao, Nianzhi*; Paracoccus beibuensis sp. nov., isolated from the South China Sea, Current Microbiology, 2011, 62: 710-714.
118) Zheng, Qiang#;Zhang, Rui#; Jiao, Nianzhi#*; Genome sequence of Citromicrobium strain JLT1363, isolated from the South China Sea, Journal of Bacteriology, 2011, 193: 2074-2075.
119) Zheng, Qiang;Zhang, Rui; Koblžek, Michal; Boldareva, Ekaterina N; Yurkov, Vladimir; Yan, Shi; Jiao, Nianzhi*; Diverse arrangement of photosynthetic gene clusters in aerobic anoxygenic phototrophic bacteria, PLoS ONE, 2011, 6: e25050.
120) 焦念志*; 骆庭伟; 张瑶;张锐; 汤凯; 陈峰; 曾永辉; 张永雨; 赵艳琳; 郑强; 海洋微型生物碳泵——从微型生物生态过程到碳循环机制效应, 厦门大学学报：自然科学版, 2011, 50: 387-401.
121) Jiao, Nianzhi#*;Zhang, Rui#; Zheng, Qiang#; Coexistence of two different photosynthetic operons in Citromicrobium bathyomarinum JL354 as revealed by whole-genome sequencing, Journal of Bacteriology, 2010, 192: 1169-1170.
122) Liu, Yong-Qiang*; Kong, Yun-Hua;Zhang, Rui; Zhang, Xing; Wong, Fook-Sin; Tay, Joo-Hwa; Zhu, J. R.; Jiang, Wen-Ju; Liu, Wen-Tso; Microbial population dynamics of granular aerobic sequencing batch reactors during start-up and steady state periods, Water Science and Technology, 2010, 62: 1281-1287.
123) Zhang, Wen; Wang, Hui;Zhang, Rui; Yu, Xiezhi; Qian, Pei-Yuan; Wong, MH*; Bacterial communities in PAH contaminated soils at an electronic-waste processing center in China, Ecotoxicology, 2010, 19: 96-104.
124) 夏晓敏; 汪建君; 陈立奇;张锐*; 厦门市区 10 月份大气气溶胶中细菌群落结构的初步研究, 厦门大学学报：自然科学版, 2010, 49: 682-687.
125) Jing, Hongmei;Zhang, Rui; Pointing, Stephen B; Liu, Hongbin*; Qian, Pei-Yuan; Genetic diversity and temporal variation of the marine Synechococcus community in the subtropical coastal waters of Hong Kong, Canadian Journal of Microbiology, 2009, 55: 311-318.
126) Ki, Jang-Seu;Zhang, Rui; Zhang, Wen; Huang, Yili; Qian, Pei-Yuan*; Analysis of RNA Polymerase beta subunit (rpoB) gene sequences for the discriminative power of marine Vibrio species, Microbial Ecology, 2009, 58: 679-691.
127) Serena M Moseman-Valtierra*; Rebecca Johnson;Zhang, Rui; Qian, Pei-Yuan; Differences in cordgrass structure between a mature and developing marsh reflect distinct N2-fixing communities, Wetlands, 2009, 29: 919-930.
128) Serena M Moseman-Valtierra*;Zhang, Rui; Qian, Pei-Yuan; Levin, LA; Diversity and functional responses of nitrogen-fixing microbes to three wetland invasions, Biological Invasions, 2009, 11: 225-239.
129)Zhang, Rui; Lau, Stanley C K; Ki, Jangseu; Vengatesen, Thiyagarajan; Qian, Pei-Yuan*; Response of bacterioplankton community structures to hydrological conditions and anthropogenic pollution in contrasting subtropical environments, FEMS Microbiology Ecology, 2009, 69: 449-460.
130) Chiu, Jill M. Y.;Zhang, Rui; Wang, Hao; Thiyagarajan, Vengatesen; Qian, Pei-Yuan*; Nutrient effects on intertidal community: from bacteria to invertebrates, Marine Ecology Progress Series, 2008, 358: 41-50.
131)Zhang, Rui; Thiyagarajan, Vengatesen; Qian, Pei-Yuan*; Evaluation of terminal-restriction fragment length polymorphism analysis in contrasting marine environments, FEMS Microbiology Ecology, 2008, 65: 169-178.
132) Hung, Oi S.; Thiyagarajan, Vengatesen;Zhang, Rui; Wu, Rudolf S. S.; Qian, Pei-Yuan*; Attachment of Balanus amphitrite larvae to biofilms originating from contrasting environments, Marine Ecology Progress Series, 2007, 333: 229-242.
133)Zhang, Rui; Liu, Baozhong; Lau, Stanley C K; Ki, Jangseu; Qian, Pei-Yuan*; Particle-attached and free-living bacterial communities in a contrasting marine environment: Victoria Harbor, Hong Kong, FEMS Microbiology Ecology, 2007, 61: 496-508.
134)Zhang, Rui#; Weinbauer, Markus G#; Qian, Pei-Yuan*; Viruses and flagellates sustain apparent richness and reduce biomass accumulation of bacterioplankton in coastal marine waters, Environmental Microbiology, 2007, 9: 3008-3018.
135) 曾润颖*; 林念炜; 连明珠;张锐; 南极产低温几丁质酶菌株的筛选及分子鉴定, 海洋科学, 2006, 30: 35-38.
136) Zeng, Runying*; Zhao, Jing;Zhang, Rui; Lin, Nianwei; Bacterial community in sediment from the Western Pacific" Warm Pool" and its relationship to environment, Science in China Serise D, 2005, 48: 282-290.
137) 曾润颖*; 赵晶;张锐; 林念炜; 西太平洋 “暖池” 区沉积物中的细菌类群及其与环境的关系, 中国科学（D辑）, 2004, 34: 265-271.
138) 林念炜;张锐; 赵晶; 曾润*; 南极产低温蛋白酶菌株 Marinobacter sp. R2 的发酵条件及酶学性质研究, 厦门大学学报：自然科学版, 2004, 43: 865-869.
139) Zeng, Runying*;Zhang, Rui; Zhao, Jing; Lin, Nianwei; Cold-active serine alkaline protease from the psychrophilic bacterium Pseudomonas strain DY-A: enzyme purification and characterization, Extremophiles, 2003, 7: 335-337.
140) 赵晶;张锐; 林念炜; 曾润颖*; 深海沉积物中微量 DNA 的提取及应用, 海洋与湖沼, 2003, 34: 313-321.
141)张锐; 林念炜; 赵晶; 曾润颖*; 朱仁斌; 孙立广; 刘晓东; 南极阿德雷岛地表沉积物中细菌多样性及对环境的响应, 自然科学进展, 2003, 13: 1067-1072.
142) 陈荣忠*; 双宝;张锐; 杨丰; 重组鲈鱼生长激素酵母饲料添加剂及对网箱喂养海水鱼的促长效应, 台湾海峡, 2003, 22: 180-186.
143)张锐; 曾润颖*; 极端微生物产碱性蛋白酶菌株的筛选及发酵条件研究, 微生物学通报, 2001, 28: 5-9.
144)张锐; 曾润颖*; 极端酶的研究进展, 台湾海峡, 2001, 20: 405-410.
