教育背景及研究工作经历:

2023.06-至今 深圳大学，高等研究院，特聘教授

2021.09-2023.05 深圳大学，高等研究院，研究员、助理教授

2018.05-2021.08 深圳大学，高等研究院，副研究员

2016.02–2018.03 深圳大学，高等研究院，博士后

2012.09–2015.12 法国图卢兹第三大学，EcoLab，博士

2009.09–2012.06 扬州大学，海洋科学与技术研究所，硕士

2005.09–2009.06 扬州大学，环境科学与工程学院，学士

研究兴趣：

古菌生物学；微生物生态学

科研经费资助：

1.国家自然科学基金重大研究计划培育项目，92051102，基于多组学拓扑学数据分析研究滨海湿地微生物活性功能模块(AFM)影响碳氮硫循环的耦合机制，2021/01-2023/12，81万元

2.国家自然科学基金青年基金项目，31700430，近岸沉积物中海洋线虫与微生物的相互作用对氮去除过程的影响，2018/01-2020/12，25万元

3.中国博士后科学基金面上资助，2017M612718,近岸沉积物中海洋线虫与微生物的互作对反硝化的影响，2017/06-2018/04，5万元

4.广东省自然科学基金-博士启动，2017A030310296，基于宏基因组学的海洋自由生活线虫对硝态氮超负荷下深圳湾反硝化过程的影响，2017/01-2019/12，10万元

论文发表：

1.Tong, Yang#; Wu, Xinying#;Liu, Yang#; Chen, Huiyu; Zhou, Yan; Jiang, Li; Li, Meng; Zhao, Suwen; Zhang, Yan. (2023). Alternative Z-genome biosynthesis pathway shows evolutionary progression from Archaea to phage.Nature Microbiology,https://doi.org/10.1038/s41564-023-01410-1

2.Du, Huan; Pan, Jie; Zou, Dayu; Huang, Yuhan;Liu, Yang*; Li, Meng*(2022) Microbial active functional modules derived from network analysis and metabolic interactions decipher the complex microbiome assembly in mangrove sediments.Microbiome10(224).https://doi.org/10.1186/s40168-022-01421-w

3.Liu, Yang; Li, Meng* (2022) The unstable evolutionary position of Korarchaeota and its relationship with other TACK and Asgard archaea.mLife1(2):218-222https://doi.org/10.1002/mlf2.12020

4.Zhou, Zhichao#;Liu, Yang#; Anantharaman, Karthik; Li, Meng* (2022) The expanding Asgard archaea invoke novel insights into Tree of Life and eukaryogenesis.mLife1(4):374-381https://doi.org/10.1002/mlf2.12048

5.Du, Huan; Li, Meng;Liu, Yang*(2023) Towards applications of genome-scale metabolic model-based approaches in designing synthetic microbial communities.Quantitative Biologyhttps://doi.org/10.15302/J-QB-022-0313

6.Liu, Yang#; Makarova, Kira S.#; Huang, Wen-Cong#; Wolf, Yuri I.; Nikolskaya, Anastasia N.; Zhang, Xinxu; Cai, Mingwei; Zhang, Cui-Jing; Xu, Wei; Luo, Zhuhua; Cheng, Lei; Koonin, Eugene V.; Li, Meng. (2021). Expanded diversity of Asgard archaea and their relationships with eukaryotes.Nature,593(7860), 553–557.https://doi.org/10.1038/s41586-021-03494-3

7.Huang, Wen-Cong#;Liu, Yang#; Zhang, Xinxu; Zhang, Cui-Jing; Zou, Dayu; Zheng, Shiling; Xu, Wei; Luo, Zhuhua; Liu, Fanghua; Li, Meng. (2021). Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota.Nature Communications,12(1), 5281.https://doi.org/10.1038/s41467-021-25565-9

8.Cai, Mingwei#;Liu, Yang#; Yin, Xiuran; Zhou, Zhichao; Friedrich, Michael W.; Richter-Heitmann, Tim; Nimzyk, Rolf; Kulkarni, Ajinkya; Wang, Xiaowen; Li, Wenjin; Pan, Jie; Yang, Yuchun; Gu, Ji-Dong; Li, Meng. (2020). Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation.Science China Life Sciences,63(6), 886–897.https://doi.org/10.1007/s11427-020-1679-1

9.Liu, Yang; Zhou, Zhichao; Pan, Jie; Baker, Brett J.; Gu, Ji-Dong; Li, Meng. (2018). Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota.The ISME Journal,12(4), 1021–1031. https://doi.org/10.1038/s41396-018-0060-x

10.Liu, Yang; Tackx, Michèle; Dauta, Alain; Julien, Frédéric; Buffan‐Dubau, Evelyne. (2021). Rotifers stimulate the specific uptake rate in lotic phototrophic biofilms.Freshwater Biology,66(7), 1245–1256.https://doi.org/10.1111/fwb.13713

11.Liu, Yang; Majdi, Nabil; Tackx, Michèle; Dauta, Alain; Gerino, Magali; Julien, Frédéric; Buffan-Dubau, Evelyne. (2015). Short-term effects of nutrient enrichment on river biofilm: N–NO3− uptake rate and response of meiofauna.Hydrobiologia,744(1), 165–175. https://doi.org/10.1007/s10750-014-2074-3

12.Liu, Yang#; Dedieu, Karine#; Sánchez-Pérez, Jose-Miguel; Montuelle, Bernard; Buffan-Dubau, Evelyne; Julien, Frédéric; Azémar, Frédéric; Sauvage, Sabine; Marmonier, Pierre; Yao, Jingmei; Vervier, Philippe; Gerino, Magali. (2017). Role of biodiversity in the biogeochemical processes at the water-sediment interface of macroporous river bed: An experimental approach.Ecological Engineering,103, 385–393.https://doi.org/10.1016/j.ecoleng.2016.03.049

13.Du, Wanlin#;Liu, Yang#; Sun, Jinhui; Wu, Naicheng; Mai, Yongzhan; Wang, Chao. (2020). The aquatic microbial community: a bibliometric analysis of global research trends (1991– 2018).Fundamental and Applied Limnology / Archiv Für Hydrobiologie,194(1), 19–32.https://doi.org/10.1127/fal/2020/1305

14.Wang, Chao#;Liu, Yang#; Zhan, Qin; Yang, Wanling; Wu, Naicheng. (2018). Global trends in phytoplankton research of river ecosystems during 1991–2016: A bibliometric analysis.Fundamental and Applied Limnology,191(1), 25–36.https://doi.org/10.1127/fal/2017/1051

15.Cai, Mingwei; Richter-Heitmann, Tim; Yin, Xiuran; Huang, Wen-Cong; Yang, Yuchun; Zhang, Cuijing; Duan, Changhai; Pan, Jie;Liu, Yang; Liu, Yue; Friedrich, Michael W.; Li, Meng. (2021). Ecological features and global distribution of Asgard archaea.Science of The Total Environment,758, 143581. https://doi.org/10.1016/j.scitotenv.2020.143581

16.Liu, Jiwen; Zheng, Yanfen; Lin, Heyu; Wang, Xuchen; Li, Meng;Liu, Yang; Yu, Meng; Zhao, Meixun; Pedentchouk, Nikolai; Lea-Smith, David J.; Todd, Jonathan D.; Magill, Clayton R.; Zhang, Wei-Jia; Zhou, Shun; Song, Delei; Zhong, Haohui; Xin, Yu; Yu, Min; Tian, Jiwei; Zhang, Xiao-Hua. (2019). Proliferation of hydrocarbon-degrading microbes at the bottom of the Mariana Trench.Microbiome,7(1), 47. https://doi.org/10.1186/s40168-019-0652-3

17.Liu, Lirui; Huang, Wen-Cong;Liu, Yang; Li, Meng. (2021). Diversity of cellulolytic microorganisms and microbial cellulases.International Biodeterioration & Biodegradation,163, 105277. https://doi.org/10.1016/j.ibiod.2021.105277

18.Liu, Xiaobo; Li, Meng; Castelle, Cindy J.; Probst, Alexander J.; Zhou, Zhichao; Pan, Jie;Liu, Yang; Banfield, Jillian F.; Gu, Ji-Dong. (2018). Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages.Microbiome,6(1), 102. https://doi.org/10.1186/s40168-018-0488-2

19.Liu, Xiaobo; Pan, Jie;Liu, Yang; Li, Meng; Gu, Ji-Dong. (2018). Diversity and distribution of Archaea in global estuarine ecosystems.Science of The Total Environment,637, 349–358. https://doi.org/10.1016/j.scitotenv.2018.05.016

20.Liu, Zongbao; Klümper, Uli;Liu, Yang; Yang, Yuchun; Wei, Qiaoyan; Lin, Jih-Gaw; Gu, Ji-Dong; Li, Meng. (2019). Metagenomic and metatranscriptomic analyses reveal activity and hosts of antibiotic resistance genes in activated sludge.Environment International,129, 208–220. https://doi.org/10.1016/j.envint.2019.05.036

21.Lu, Zhongyi; Fu, Ting; Li, Tianyi;Liu, Yang; Zhang, Siyu; Li, Jinquan; Dai, Junbiao; Koonin, Eugene V.; Li, Guohui; Chu, Huiying; Li, Meng. (2020). Coevolution of Eukaryote-like Vps4 and ESCRT-III Subunits in the Asgard Archaea.MBio,11(3), e00417-20. https://doi.org/10.1128/mbio.00417-20

22.Makarova, Kira S.; Wolf, Yuri I.; Shmakov, Sergey A.;Liu, Yang; Li, Meng; Koonin, Eugene V. (2020). Unprecedented Diversity of Unique CRISPR-Cas-Related Systems and Cas1 Homologs in Asgard Archaea.The CRISPR Journal,3(3), 156–163. https://doi.org/10.1089/crispr.2020.0012

23.Pan, Jie; Zhou, Zhichao; Béjà, Oded; Cai, Mingwei; Yang, Yuchun;Liu, Yang; Gu, Ji-Dong; Li, Meng. (2020). Genomic and transcriptomic evidence of light-sensing, porphyrin biosynthesis, Calvin-Benson-Bassham cycle, and urea production in Bathyarchaeota.Microbiome,8(1), 43. https://doi.org/10.1186/s40168-020-00820-1

24.Sun, Yihua;Liu, Yang; Pan, Jie; Wang, Fengping; Li, Meng. (2020). Perspectives on Cultivation Strategies of Archaea.Microbial Ecology,79(3), 770–784. https://doi.org/10.1007/s00248-019-01422-7

25.Wang, Baozhan; Qin, Wei; Ren, Yi; Zhou, Xue; Jung, Man-Young; Han, Ping; Eloe-Fadrosh, Emiley A.; Li, Meng; Zheng, Yue; Lu, Lu; Yan, Xin; Ji, Junbin;Liu, Yang; Liu, Linmeng; Heiner, Cheryl; Hall, Richard; Martens-Habbena, Willm; Herbold, Craig W.; Rhee, Sung-keun; … Jia, Zhongjun. (2019). Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons.The ISME Journal,13(12), 3067–3079. https://doi.org/10.1038/s41396-019-0493-x

26.Wu, Naicheng; Dong, Xuhui;Liu, Yang; Wang, Chao; Baattrup-Pedersen, Annette; Riis, Tenna. (2017). Using river microalgae as indicators for freshwater biomonitoring: Review of published research and future directions.Ecological Indicators,81, 124–131. https://doi.org/10.1016/j.ecolind.2017.05.066

27.Yang, Yuchun; Daims, Holger;Liu, Yang; Herbold, Craig W.; Pjevac, Petra; Lin, Jih-Gaw; Li, Meng; Gu, Ji-Dong. (2020). Activity and Metabolic Versatility of Complete Ammonia Oxidizers in Full-Scale Wastewater Treatment Systems.MBio,11(2), e03175-19. https://doi.org/10.1128/mbio.03175-19

28.Yang, Yuchun; Pan, Jie; Zhou, Zhichao; Wu, Jiapeng;Liu, Yang; Lin, Jih-Gaw; Hong, Yiguo; Li, Xiaoyan; Li, Meng; Gu, Ji-Dong. (2020). Complex microbial nitrogen-cycling networks in three distinct anammox-inoculated wastewater treatment systems.Water Research,168, 115142. https://doi.org/10.1016/j.watres.2019.115142

29.Yin, Xiuran; Cai, Mingwei;Liu, Yang; Zhou, Guowei; Richter-Heitmann, Tim; Aromokeye, David A.; Kulkarni, Ajinkya C.; Nimzyk, Rolf; Cullhed, Henrik; Zhou, Zhichao; Pan, Jie; Yang, Yuchun; Gu, Ji-Dong; Elvert, Marcus; Li, Meng; Friedrich, Michael W. (2021). Subgroup level differences of physiological activities in marine Lokiarchaeota.The ISME Journal,15(3), 848–861. https://doi.org/10.1038/s41396-020-00818-5

30.Zhang, Cui-Jing; Pan, Jie; Duan, Chang-Hai; Wang, Yong-Ming;Liu, Yang; Sun, Jian; Zhou, Hai-Chao; Song, Xin; Li, Meng. (2019). Prokaryotic Diversity in Mangrove Sediments across Southeastern China Fundamentally Differs from That in Other Biomes.MSystems,4(5), e00442-19. https://doi.org/10.1128/msystems.00442-19

31.Zhang, Cui-Jing; Pan, Jie;Liu, Yang; Duan, Chang-Hai; Li, Meng. (2020). Genomic and transcriptomic insights into methanogenesis potential of novel methanogens from mangrove sediments.Microbiome,8(1), 94. https://doi.org/10.1186/s40168-020-00876-z

32.Zhang, Jia-Wei; Dong, Hong-Po; Hou, Li-Jun;Liu, Yang; Ou, Ya-Fei; Zheng, Yan-Ling; Han, Ping; Liang, Xia; Yin, Guo-Yu; Wu, Dian-Ming; Liu, Min; Li, Meng. (2021). Newly discovered Asgard archaea Hermodarchaeota potentially degrade alkanes and aromatics via alkyl/benzyl-succinate synthase and benzoyl-CoA pathway.The ISME Journal,15(6), 1826–1843. https://doi.org/10.1038/s41396-020-00890-x

33.Zhang, Xiaowei;Liu, Yang; Gu, Ji-Dong. (2018). A global analysis on the distribution pattern of the bacteria coupling simultaneous methane oxidation to nitrite reduction.International Biodeterioration & Biodegradation,129, 123–132. https://doi.org/10.1016/j.ibiod.2018.01.014

34.Zhang, Xinxu; Xu, Wei;Liu, Yang; Cai, Mingwei; Luo, Zhuhua; Li, Meng. (2018). Metagenomics Reveals Microbial Diversity and Metabolic Potentials of Seawater and Surface Sediment From a Hadal Biosphere at the Yap Trench.Frontiers in Microbiology,9, 2402. https://doi.org/10.3389/fmicb.2018.02402

35.Zheng, Shiling; Li, Meng;Liu, Yang; Liu, Fanghua. (2021). Desulfovibrio feeding Methanobacterium with electrons in conductive methanogenic aggregates from coastal zones.Water Research,202, 117490. https://doi.org/10.1016/j.watres.2021.117490

36.Zhou, Zhichao;Liu, Yang; Li, Meng; Gu, Ji-Dong. (2018). Two or three domains: a new view of tree of life in the genomics era.Applied Microbiology and Biotechnology,102(7), 3049–3058. https://doi.org/10.1007/s00253-018-8831-x

37.Zhou, Zhichao;Liu, Yang; Lloyd, Karen G.; Pan, Jie; Yang, Yuchun; Gu, Ji-Dong; Li, Meng. (2019). Genomic and transcriptomic insights into the ecology and metabolism of benthic archaeal cosmopolitan, Thermoprofundales (MBG-D archaea).The ISME Journal,13(4), 885–901. https://doi.org/10.1038/s41396-018-0321-8

38.Zhou, Zhichao;Liu, Yang; Pan, Jie; Cron, Brandi R.; Toner, Brandy M.; Anantharaman, Karthik; Breier, John A.; Dick, Gregory J.; Li, Meng. (2020). Gammaproteobacteria mediating utilization of methyl-, sulfur- and petroleum organic compounds in deep ocean hydrothermal plumes.The ISME Journal,14(12), 3136–3148. https://doi.org/10.1038/s41396-020-00745-5

39.Zhou, Zhichao;Liu, Yang; Xu, Wei; Pan, Jie; Luo, Zhu-Hua; Li, Meng. (2020). Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of Hydrothermarchaeota in Hydrothermal Sediment.MSystems,5(1). https://doi.org/10.1128/msystems.00795-19

40.Zhou, Zhichao; Meng, Han;Liu, Yang; Gu, Ji-Dong; Li, Meng. (2017). Stratified Bacterial and Archaeal Community in Mangrove and Intertidal Wetland Mudflats Revealed by High Throughput 16S rRNA Gene Sequencing.Frontiers in Microbiology,8, 2148. https://doi.org/10.3389/fmicb.2017.02148

41.Zou, Dayu; Wan, Ru; Han, Lili; Xu, Min Nina;Liu, Yang; Liu, Hongbin; Kao, Shuh-Ji; Li, Meng. (2020). Genomic Characteristics of a Novel Species of Ammonia-Oxidizing Archaea from the Jiulong River Estuary.Applied and Environmental Microbiology,86(18). https://doi.org/10.1128/aem.00736-20